Structural dynamics and permeability of the TRPV3 pentamer.

TitleStructural dynamics and permeability of the TRPV3 pentamer.
Publication TypeJournal Article
Year of Publication2025
AuthorsLansky S, Wang Z, Clarke OB, Chipot C, Scheuring S
JournalNat Commun
Volume16
Issue1
Pagination4520
Date Published2025 May 15
ISSN2041-1723
KeywordsAnimals, Binding Sites, Cryoelectron Microscopy, Humans, Microscopy, Atomic Force, Molecular Dynamics Simulation, Permeability, Protein Multimerization, TRPV Cation Channels
Abstract

TRPV3 belongs to the large superfamily of tetrameric transient receptor potential (TRP) ion channels. Recently, using high-speed atomic force microscopy (HS-AFM), we discovered a rare and transient pentameric state for TRPV3 that is in equilibrium with the tetrameric state, and, using cryo-EM, we solved a low-resolution structure of the TRPV3 pentamer, in which, however, many residues were unresolved. Here, we present a higher resolution and more complete structure of the pentamer, revealing a domain-swapped architecture, a collapsed vanilloid binding site, and a large pore. Molecular dynamics simulations and potential of mean force calculations of the pentamer establish high protein dynamics and permeability to large cations. Subunit interface analysis, together with thermal denaturation experiments, led us to propose a molecular mechanism of the tetramer-to-pentamer transition, backed experimentally by HS-AFM observations. Collectively, our data demonstrate that the TRPV3 pentamer is in a hyper-activated state with unique, highly permissive permeation properties.

DOI10.1038/s41467-025-59798-9
Alternate JournalNat Commun
PubMed ID40374654
PubMed Central IDPMC12081643
Grant ListDP1AT010874 / / U.S. Department of Health & Human Services | NIH | National Center for Complementary and Integrative Health (NCCIH) /
R01NS134559 / / U.S. Department of Health & Human Services | NIH | National Institute of Neurological Disorders and Stroke (NINDS) /