Torsion is a dynamic regulator of DNA replication stalling and reactivation.

TitleTorsion is a dynamic regulator of DNA replication stalling and reactivation.
Publication TypeJournal Article
Year of Publication2025
AuthorsJia X, Gao X, Zhang S, Inman JT, Hong Y, Singh A, Rashid F, Berger JM, Patel SS, Wang MD
JournalNat Commun
Volume16
Issue1
Pagination10543
Date Published2025 Nov 26
ISSN2041-1723
KeywordsBacteriophage T7, DNA, DNA Helicases, DNA Replication, DNA, Bacterial, DNA-Directed DNA Polymerase, Escherichia coli, Escherichia coli Proteins, Nucleic Acid Conformation, Rotation, Torque
Abstract

DNA's helical structure necessitates replisome rotation relative to DNA during replication, creating inevitable topological challenges. How replication generates and overcomes torsional stress remains unclear. Here, we developed a high-resolution, label-free, real-time assay to track DNA rotation by T7 replisome and its slowing under torsional stress. While helicase or DNA polymerase (DNAP) alone is a weak rotary motor, together they form the most powerful DNA rotary motor yet studied, generating ~22 pN·nm torque before stalling, twice that of E. coli RNA polymerase. Upon stalling, helicase-DNAP interactions stabilize the fork; without them, regression can extend hundreds of base pairs. Prolonged stalling inactivates the replisome, but excess DNAP, aided by interactions with helicase, promotes restart. Gyrase supports steady replication and enables timely restart of stalled forks. These findings demonstrate that helicase-DNAP synergy is essential for maintaining fork integrity under torsion, and that torsion is a key regulator of replication stalling and reactivation.

DOI10.1038/s41467-025-65567-5
Alternate JournalNat Commun
PubMed ID41298417
PubMed Central IDPMC12658067
Grant ListR37 GM071747 / GM / NIGMS NIH HHS / United States
R01GM136894 / / U.S. Department of Health & Human Services | National Institutes of Health (NIH) /
R37GM071747 / / U.S. Department of Health & Human Services | National Institutes of Health (NIH) /
R35 GM118086 / GM / NIGMS NIH HHS / United States
R01 GM136894 / GM / NIGMS NIH HHS / United States
NA / / Howard Hughes Medical Institute (HHMI) /
R35GM118086 / / U.S. Department of Health & Human Services | National Institutes of Health (NIH) /